PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00049g14007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8553.34 Da    PI: 11.8997
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00049g14007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885e-281059251
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              ri+n + rqvtfskRr g+lKKA+ELS+LCda+v +iifsstgkl e++s
  Peinf101Scf00049g14007.1 10 RIDNLTSRQVTFSKRRSGLLKKAKELSILCDAQVGLIIFSSTGKLSEFAS 59
                              8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.543161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-28266IPR002100Transcription factor, MADS-box
CDDcd002655.53E-35266No hitNo description
PRINTSPR004044.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MGRGKIVIRR IDNLTSRQVT FSKRRSGLLK KAKELSILCD AQVGLIIFSS TGKLSEFAST  60
RVVRVIFLKL AKLIIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-19166166Myocyte-specific enhancer factor 2B
1tqe_Q3e-19166166Myocyte-specific enhancer factor 2B
1tqe_R3e-19166166Myocyte-specific enhancer factor 2B
1tqe_S3e-19166166Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828468.15e-32PREDICTED: MADS-box transcription factor ANR1-like
RefseqXP_010029979.17e-32PREDICTED: MADS-box transcription factor 23-like isoform X2
RefseqXP_015388295.18e-32PREDICTED: MADS-box transcription factor 23-like isoform X3
SwissprotQ9SI383e-32ANR1_ARATH; MADS-box transcription factor ANR1
TrEMBLA0A059ASX61e-33A0A059ASX6_EUCGR; Uncharacterized protein
STRINGVIT_00s0211g00150.t012e-31(Vitis vinifera)
STRINGSi019880m3e-31(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.12e-33AGAMOUS-like 44